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Posts by Greg_BE

1) Message boards : Number crunching : How do I get my stats? (Message 2365)
Posted 9 days ago by Greg_BE
Post:
Europe is UTC+1. Since this project is in Spain his local time on the system is +1 to the UTC reported time
Yes I know. I've been there. I was wondering why both dates don't reflect this. There is a 3 hour difference between the sent time and receive time. My logs show a 2 hour difference between my received (download) time and my sent (upload) time respectively.

It was only a FYI comment. It makes no difference to anything.

Like this:
Name 	HuVeMOp_20240409142215232055_ORdInc_k_15-Pieske_1000-conf_131_1
Workunit 	19686803
Created 	9 Apr 2024, 12:39:59 UTC
Sent 	9 Apr 2024, 13:25:06 UTC
Report deadline 	12 Apr 2024, 13:25:06 UTC
Received 	9 Apr 2024, 15:36:13 UTC

MY TIME: UTC-4
2024-04-09 9:25:15 | DENIS@home | Starting task HuVeMOp_20240409142215232055_ORdInc_k_15-Pieske_1000-conf_131_1
2024-04-09 10:35:19 | DENIS@home | Computation for task HuVeMOp_20240409142215232055_ORdInc_k_15-Pieske_1000-conf_131_1 finished


I had a theory, but it doesn't jive with what I found for 'sent time', etc.
I'll have to dig on friday when I have more time. I never paid attention to those lines.
2) Message boards : Number crunching : How do I get my stats? (Message 2360)
Posted 10 days ago by Greg_BE
Post:
Bobby - Europe is UTC+1. Since this project is in Spain his local time on the system is +1 to the UTC reported time.


I know about the 7x Boinc credits for WCG.

I was not trying to figure out the biggest bang for the buck between Boinc projects but just trying to figure out how each does it, matching it to what I see in my logs and their results and seeing if it all jives.

I think you are both saying the same thing as I did about WCG credits and Rosetta points and about your GPU vs CPU/FPU credits comparison: the more operations/second the more credits over a time period. This tells me each unit gets n credits and if you can chew up 10 units in a time period you get 10n credits but if the slower CPU/FPU (or low-end 4-core machine) only does 3 units in the same time period then it only gets 3n credits. Fair.

I've analysed all three now.
Both Denis and WCG report CPU/RUN times in the same manner where the 5950x is twice as long as the 3900x but the resulting credits are similar in points. This supports my theory that the 5950x is throttling itself. So I get less for less.

Funny that here, in Denis, the sent time matches my log start time but the time reported is one hour later than my log finished time. My suspicion is that the former is using my UTC offset which is -4 and the later is using UTC.

Now Rosetta must be using a fixed time WU. On my 4-core i5-2520M the run time is about 3 hours; same as my 5950x and 3900x. So I'm guessing it must know how much work gets done in that time and assigns credits accordingly. My 5950x gets less than the 3900x. Now this also supports my theory that the 5950x is throttling itself. Or does it use my Boinc benchmark which it stores in my profile for that computer. I'm waiting for more units to be available to test this.
3) Message boards : Number crunching : How do I get my stats? (Message 2356)
Posted 11 days ago by Greg_BE
Post:
I have no data for this project but I did find that Rosetta seems to give points based on time and floating point MIPS (Whetstone) per CPU which it finds in in client_state.xml from <p_fpops> and <p_iops>. When you do a Boinc benchmark it stashes it there.

WCG seems to assign credits per job regardless of time.

It's written up in the hardware forum over there.
That is definitely NOT the case. The only project that I am aware of (and at times participate in as backup project) is Einstein@Home.

In general, most projects award points depending on the amount of computations (cobblestones, as you can see for example mentioned on the certificate you can get at some projects, including DENIS). That's why a lot of pointw*****s favoring GPU projects, as there they get the most points in the shortest amount of time due to the high number of floating point operations per second compared to regular CPU/FPU computation...


Ralf


I noticed that as well. My GPU projects go way higher than my CPU. Figured it was something like you mentioned.
4) Message boards : Number crunching : Server is out of work (Message 2352)
Posted 11 days ago by Greg_BE
Post:
Jesus,

When you get locked out of your lab for vacation or whatever, if you have access to the forums, leave us a little note on what is going on. Then we don't guess.

I figured since my boss was off work and one other guy that has kids was off, you were probably off on vacation for a week.

Good to have you back
5) Message boards : Number crunching : Server is out of work (Message 2348)
Posted 15 days ago by Greg_BE
Post:
It is possible being it is Easter break here in Europe that Jesus and his group are not working at the campus for two weeks. Schools are out and some people are taking a short vacation. This vacation ends the 12th.
6) Message boards : Number crunching : Server is out of work (Message 2331)
Posted 20 days ago by Greg_BE
Post:
I already have Sidock.
I run Rosetta (where i first started this kind of work) but they get really sporadic sometimes being they have a AI they use for a lot of work.
7) Message boards : Number crunching : Server is out of work (Message 2329)
Posted 21 days ago by Greg_BE
Post:
I don't know how long this has been going on...but I finally had a chance to check my stats in BOINC and saw the line going down, plus in my profile, I have all 0's for tasks.


That does not reflect my experience. My experience is that Denis goes up and down so sometimes I have none, and sometimes I have huge number of Denis tasls in my machine. As far as credits are concerned, in the last month the curve for Denis has gone up from 5000 to 5300; a small increase. My WCG has given a consideral increase but with much more variability than Denis. I have received no work at all on my Linux machine since last June for ClimatePrediction.
DENIS always (since I added it in October last year) had bursts of several 100,000 of WUs available, which is followed by several days of no new WUs at all, apparently until all outstanding WUs have been returned.
Right now, it seems that there have been no new WUs for the last two days now, and with the weekend already started in Spain/Europe, I don't expect another heap of new WUs showing up until Monday morning (my time, I am on the US West Coast, that's GMT-9 compared to Spain). Though it had happened a couple of times that there was a refill of WUs over a weekend...
Right now, one of my hosts is just crunching on the last DENIS WU (a slow i7 laptop) while another mobile i7 has 37 WUs left in the queue, which are currently just "ready" as they are due on the 31st and another project has some WUs that were on the back burner and are now due by the 30th...


Ralf



I live in Europe. We all take this Monday off as a holiday after Easter Sunday. So I doubt Jose will be releasing anything Monday. Maybe if he has new work,Tuesday sometime.
8) Message boards : Number crunching : Server is out of work (Message 2325)
Posted 22 days ago by Greg_BE
Post:
I don't know how long this has been going on...but I finally had a chance to check my stats in BOINC and saw the line going down, plus in my profile, I have all 0's for tasks.

But there is 114,300+ in progress
9) Message boards : Number crunching : Database error (Message 2302)
Posted 15 Mar 2024 by Greg_BE
Post:
Doesn't matter. Someone had that as part of their post, I didn't look at who specifically.
But that is irrelevant to this project.


It is slightly relevant to this project if only for the fact that when WCG is down or spotty, more resources come to a project like this, at least for some time.

Cheers



Well I started over at Baker Lab but they moved most of their work into AI systems in their lab and its sporadic what they do send out for BOINC. Looks like they are back now with some work. They used to be like here, lots of work, lots of information, but that all died. So its refreshing to see a new and excited team working on a project.
10) Message boards : News : Hard drive space crisis solved // Crisis de espacio en el disco duro resuelta (Message 2301)
Posted 15 Mar 2024 by Greg_BE
Post:
Raf- wife had hormonal breast cancer. Benign. I had a rare testicular cancer that stumped even the university types until dissection. It was a super rare tumor deep inside. It is less than 1% of the US population that gets this. It was also benign. Her mother had a rare form of abdominal cancer but it resisted all forms of standard treatment. A trial showed some promise, but not enough to stay in it. So that is why I take interest in cancer research. I was with Rosetta for a long time, but due to changes in their program they don't produce enough work.

Jose here with the heart is something new and exciting and he cranks out so much work, there is always something. Ok, when the cows came it killed the queue, but thats a good thing.
11) Message boards : News : Hard drive space crisis solved // Crisis de espacio en el disco duro resuelta (Message 2294)
Posted 13 Mar 2024 by Greg_BE
Post:
Jesus,

Kind of a good thing for your project to grow so rapidly, just not so good on our end.

Can I suggest two possible ways to get the word out quickly to us when you have an unexpected event happen? Someone mentioned X/Twitter. That is one good place to start and the other is to send out a broadcast notice like we see when you do these news messages. Just drop us a couple of lines saying what is going on so we know you are actively trying to fix the problem.

Continued success with your project!
12) Message boards : News : Hard drive space crisis solved // Crisis de espacio en el disco duro resuelta (Message 2293)
Posted 13 Mar 2024 by Greg_BE
Post:
But due to bad experience at the World Community Grid (which, with their handling of their projects, has probably driven a lot of folks over here in recent months, including me), PLEASE, even if things go bad, which is something that can always happen, try to post some update quickly about what is going on. And if the forum is taken down as well, put it up on your FB site or X.
Honest bad news is by the vast majority better received than no news at all.


I am one of those who came here from WCG, due to their two-years of downtime. Then pretend to be up, but the only tasks I get are MCM1, and nothing from the other four. And even MCM is down a lot of the time.
I also signed up for Universe and MilkyWay. But Universe seems to be going to only the Python stuff and he other only GPU that I do not allow. So I resigned from those two (yesterday).

(But for me, even FB is bad as I cannot login. They do not like my password, but when I go through the motions to change the password, they send me a 6-digit access code to prove I am at my e-mail address. but they do not accept the access code they send me. I seem to be banned as there is no way to speak to anyone: no telephone number, no working e-mail address, nothing. None of this is the problem of Denis, though.)




If you want a non BOINC GPU/CPU program to run for science, then download Folding@Home. They often run stuff that was designed by Baker Lab and take stuff from many other sources that are looking for a home in the DC world. Don't think their tech requirements are to strict.

Look at your DM regarding FB.
13) Message boards : Number crunching : Database error (Message 2288)
Posted 13 Mar 2024 by Greg_BE
Post:
on WCG...did you read their tweet from last week?
Basically on a wild guess it will be the end of the month or later before they are back.
Not quite sure to whom and what you are referring to...



Doesn't matter. Someone had that as part of their post, I didn't look at who specifically.
But that is irrelevant to this project.
14) Message boards : Number crunching : Database error (Message 2282)
Posted 12 Mar 2024 by Greg_BE
Post:
on WCG...did you read their tweet from last week?
Basically on a wild guess it will be the end of the month or later before they are back.
15) Message boards : Number crunching : Database error (Message 2281)
Posted 12 Mar 2024 by Greg_BE
Post:
Still issues on the account side. Very slow to respond.
Since I share my resources with a bunch of other projects, I have only 261 pending validation, but the wingmen also are waiting. Workunits waiting for validation 114234

And it looks like we will be out of work soon if he doesn't release new work.
Tasks ready to send 10


And then:
Tasks in progress 40469
16) Message boards : Number crunching : Database error (Message 2275)
Posted 12 Mar 2024 by Greg_BE
Post:
What is going on?
You go down on the weekend, come back up for a bit and then crash again in the evening of Monday.

You do not put any news out in a broadcast message or a post here....so what is going on?

As to the comment about WCG....yeah no kidding. I am thinking of dropping that. Waste of time now.
17) Message boards : News : Results and new simulations // Resultados y nuevas simulaciones (Message 2135)
Posted 23 Jun 2023 by Greg_BE
Post:
Other than the occasional server issue (growing pains) it sounds like your theories are progressing well.

Are you monitoring your system on the weekend for troubles?
I run my system 8 or so hours at night and 24hrs a day saturday and sunday. So if I get a server error I will know you saw it and will fix it. I hate having a backlog of tasks sitting on my system.

Is there some place we can go to look up what you are referring to?
Any way to provide a screen shot of what a "model" looks like?
What is the O'Hara and Rudy model?


Yes, we monitoring on the weekend, but with less frequency than other days. I understood you want to upload your tasks as soon as possible, and for that reason we are working on prevent the issues.

On the other hand, it is very complicated to explain how a model looks like. They are a lot of equations trying to represent how the different variables of a cell interact. The O'Hara and Rudy model is described in https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002061. At some point I want to start writing some more informative articles on the basis of our research so that I can explain more complex things later. Classes have finished and a quieter period is approaching... Let's see if I can start with this idea.

Best,
Jesús.


I had a look, the "model" is more of a graph I guess. I was still thinking in terms of protein models like Rosetta. That paper makes my brain freeze! I have done a lot of medical events as a AV tech in my earlier years (15-20 years ago) but this is way over my head!

As far as a informative artcles go, Looking forward to it! Good luck!, I hope you can simplify the complex science into something we can understand. I had no idea this was so complex!
18) Message boards : News : Results and new simulations // Resultados y nuevas simulaciones (Message 2125)
Posted 20 Jun 2023 by Greg_BE
Post:
Other than the occasional server issue (growing pains) it sounds like your theories are progressing well.

Are you monitoring your system on the weekend for troubles?
I run my system 8 or so hours at night and 24hrs a day saturday and sunday. So if I get a server error I will know you saw it and will fix it. I hate having a backlog of tasks sitting on my system.

Is there some place we can go to look up what you are referring to?
Any way to provide a screen shot of what a "model" looks like?
What is the O'Hara and Rudy model?
19) Message boards : News : Status of the project // Estado del proyecto (Message 2085)
Posted 27 Apr 2023 by Greg_BE
Post:
Jesus, when will there be new work from your project?
20) Message boards : Number crunching : What is this? (Message 2084)
Posted 27 Apr 2023 by Greg_BE
Post:
From event viewer:


4/27/2023 4:14:03 PM | DENIS@home | Started download of denis_logo_mini.png
4/27/2023 4:14:04 PM | DENIS@home | Finished download of denis_logo_mini.png
4/27/2023 4:14:04 PM | DENIS@home | [error] MD5 check failed for denis_logo_mini.png
4/27/2023 4:14:04 PM | DENIS@home | [error] expected 9e49b9b414ce41ac0fad7dc877fd994f18267080a78ed407169599edbefd265, got f5fa73e2c8a34a6b94d628beb60ca8c9
4/27/2023 4:14:04 PM | DENIS@home | [error] Checksum or signature error for denis_logo_mini.png
4/27/2023 4:14:15 PM | DENIS@home | Started download of Error_evolution_20230411_en.png
4/27/2023 4:14:16 PM | DENIS@home | Finished download of Error_evolution_20230411_en.png
4/27/2023 4:14:16 PM | DENIS@home | [error] MD5 check failed for Error_evolution_20230411_en.png
4/27/2023 4:14:16 PM | DENIS@home | [error] expected d54c12fbe289b35d0fdc5e400b9faf422baf42f4a6c7d82036c30de9d307ebd, got 359af274ab0ee7871407ab1e00f659f9
4/27/2023 4:14:16 PM | DENIS@home | [error] Checksum or signature error for Error_evolution_20230411_en.png


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