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Posts by Greg_BE

1) Message boards : News : Results and new simulations // Resultados y nuevas simulaciones (Message 2135)
Posted 23 Jun 2023 by Greg_BE
Post:
Other than the occasional server issue (growing pains) it sounds like your theories are progressing well.

Are you monitoring your system on the weekend for troubles?
I run my system 8 or so hours at night and 24hrs a day saturday and sunday. So if I get a server error I will know you saw it and will fix it. I hate having a backlog of tasks sitting on my system.

Is there some place we can go to look up what you are referring to?
Any way to provide a screen shot of what a "model" looks like?
What is the O'Hara and Rudy model?


Yes, we monitoring on the weekend, but with less frequency than other days. I understood you want to upload your tasks as soon as possible, and for that reason we are working on prevent the issues.

On the other hand, it is very complicated to explain how a model looks like. They are a lot of equations trying to represent how the different variables of a cell interact. The O'Hara and Rudy model is described in https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002061. At some point I want to start writing some more informative articles on the basis of our research so that I can explain more complex things later. Classes have finished and a quieter period is approaching... Let's see if I can start with this idea.

Best,
Jesús.


I had a look, the "model" is more of a graph I guess. I was still thinking in terms of protein models like Rosetta. That paper makes my brain freeze! I have done a lot of medical events as a AV tech in my earlier years (15-20 years ago) but this is way over my head!

As far as a informative artcles go, Looking forward to it! Good luck!, I hope you can simplify the complex science into something we can understand. I had no idea this was so complex!
2) Message boards : News : Results and new simulations // Resultados y nuevas simulaciones (Message 2125)
Posted 20 Jun 2023 by Greg_BE
Post:
Other than the occasional server issue (growing pains) it sounds like your theories are progressing well.

Are you monitoring your system on the weekend for troubles?
I run my system 8 or so hours at night and 24hrs a day saturday and sunday. So if I get a server error I will know you saw it and will fix it. I hate having a backlog of tasks sitting on my system.

Is there some place we can go to look up what you are referring to?
Any way to provide a screen shot of what a "model" looks like?
What is the O'Hara and Rudy model?
3) Message boards : News : Status of the project // Estado del proyecto (Message 2085)
Posted 27 Apr 2023 by Greg_BE
Post:
Jesus, when will there be new work from your project?
4) Message boards : Number crunching : What is this? (Message 2084)
Posted 27 Apr 2023 by Greg_BE
Post:
From event viewer:


4/27/2023 4:14:03 PM | DENIS@home | Started download of denis_logo_mini.png
4/27/2023 4:14:04 PM | DENIS@home | Finished download of denis_logo_mini.png
4/27/2023 4:14:04 PM | DENIS@home | [error] MD5 check failed for denis_logo_mini.png
4/27/2023 4:14:04 PM | DENIS@home | [error] expected 9e49b9b414ce41ac0fad7dc877fd994f18267080a78ed407169599edbefd265, got f5fa73e2c8a34a6b94d628beb60ca8c9
4/27/2023 4:14:04 PM | DENIS@home | [error] Checksum or signature error for denis_logo_mini.png
4/27/2023 4:14:15 PM | DENIS@home | Started download of Error_evolution_20230411_en.png
4/27/2023 4:14:16 PM | DENIS@home | Finished download of Error_evolution_20230411_en.png
4/27/2023 4:14:16 PM | DENIS@home | [error] MD5 check failed for Error_evolution_20230411_en.png
4/27/2023 4:14:16 PM | DENIS@home | [error] expected d54c12fbe289b35d0fdc5e400b9faf422baf42f4a6c7d82036c30de9d307ebd, got 359af274ab0ee7871407ab1e00f659f9
4/27/2023 4:14:16 PM | DENIS@home | [error] Checksum or signature error for Error_evolution_20230411_en.png
5) Message boards : News : New simulations // Nuevas simulaciones (Message 2018)
Posted 18 Feb 2023 by Greg_BE
Post:
Now we are out of work again, what's next in the project?
Will this project ever turn into a massive output of tasks like some of the other projects on BOINC or will this be an on and off type project as you complete each section?


Yes, in the future we should have a constant flow of tasks, but first we need to finish fine-tuning the algorithm and how we work with the models. These first ones are a test with a model that we hope to extend later, but for now we are launching part by part to analyze. We don't want to put it in automatic mode and then have to throw a lot away.



It make sense to do it in sections until you have it working the way you want it to.
By the way, do you have any screen shots of a graphical nature to show us what we are doing or what you are trying to do? I'm a visual guy, so all the text tells me stuff, but I would love to see what it is we do.
6) Message boards : News : New simulations // Nuevas simulaciones (Message 2013)
Posted 14 Feb 2023 by Greg_BE
Post:
Now we are out of work again, what's next in the project?
Will this project ever turn into a massive output of tasks like some of the other projects on BOINC or will this be an on and off type project as you complete each section?
7) Message boards : News : New simulations // Nuevas simulaciones (Message 2011)
Posted 11 Feb 2023 by Greg_BE
Post:
I don't understand all the "fit" stuff that you are talking about in your BOINC announcement.
I even took you Spanish version and ran it through Google Translate and got the same thing you had put in the announcement.

Can you explain in a different way what you mean by all your "fit" words?
8) Message boards : News : New simulations // Nuevas simulaciones (Message 2007)
Posted 7 Feb 2023 by Greg_BE
Post:
And we are back with a large queue to be processed!
Yay!!!
(happy dance)
9) Message boards : Number crunching : I sent a PM to an admin here (Message 2002)
Posted 1 Feb 2023 by Greg_BE
Post:
First of all, this project isn't stable enough to add any more significant resources.
He is still working out problems with the data, if you watch the news section.

Anyway..did you contact Jesus?
https://denis.usj.es/denisathome/show_user.php?userid=2
He's the one in charge.
10) Message boards : News : New simulations // Nuevas simulaciones (Message 1997)
Posted 25 Jan 2023 by Greg_BE
Post:
Have you uploaded any new tasks?
I am just checking back in after last nights viewing and the total tasks ready is still 0.
11) Message boards : News : New simulations // Nuevas simulaciones (Message 1976)
Posted 19 Jan 2023 by Greg_BE
Post:
I was just checking back to see what was going on here.
I'll add this project back to my mix in the morning.
Its midnight CET and I shut down at this time.
12) Message boards : News : Temporary stop of tasks // Parada temporal de las tareas (Message 1939)
Posted 21 Oct 2022 by Greg_BE
Post:
Jesus,

As your tech team how to do a "broadcast message" via BOINC manager notices that reflects major announcements like starting up again or server problems, etc.

When you start up again, just send out a message that way (via notices) and it will reflect what you put on your news section on your front page.
Then all of will know when your back to work again.

Meanwhile good luck with everything.
13) Message boards : News : Temporary stop of tasks // Parada temporal de las tareas (Message 1936)
Posted 20 Oct 2022 by Greg_BE
Post:
Thank You Jesus,

So your saying essentially is one of the data points is not conforming to the science.
Maybe it would be faster to just drop that problem and send us the rest of the data.

Is this your only distributed computing project?
Do you have something else you can send out to keep the project going while you figure out what's going on with the current project?

I just suspended your project for now and will check back end of the month.
But a project with a month of no work, people may leave and may never come back.
14) Message boards : News : Temporary stop of tasks // Parada temporal de las tareas (Message 1934)
Posted 17 Oct 2022 by Greg_BE
Post:
Jesús,

What is the status of your project this week?
You had a good start and then suddenly stopped.

We do not fully understand what the 'problem' is that you have found in the work we have returned. Can you explain what the 'problem' is and if you are close to a solution?

I think for now I will put your project on 'hold' and check back at the end of the month. Or maybe you get do a broadcast notice that shows up in BOINC so we know your running again?
15) Message boards : News : Temporary stop of tasks // Parada temporal de las tareas (Message 1932)
Posted 10 Oct 2022 by Greg_BE
Post:
Hi Greg_BE,
We are still analyzing the problem. At least one week more.

Best,
Jesús



Thank you for the update!
16) Message boards : News : Temporary stop of tasks // Parada temporal de las tareas (Message 1930)
Posted 7 Oct 2022 by Greg_BE
Post:
Any update as to when this project will resume?
17) Message boards : Number crunching : New tasks? (Message 1923)
Posted 25 Sep 2022 by Greg_BE
Post:
A reply would be appreciated.



It's the weekend, he is probably not monitoring.
Give him around 12 hours to get started on Monday and figure out what is going on.
18) Message boards : Number crunching : Myocyte beta 0.18 (Message 1844)
Posted 9 Aug 2022 by Greg_BE
Post:
24 done so far.
All clean, no problems.
19) Message boards : Number crunching : Myocyte beta v0.16 (Message 1825)
Posted 3 Aug 2022 by Greg_BE
Post:
not seeing any issues on my system.
tasks are done in 58 minutes to just a bit over an hour.
I only shut my system down at 0000 CET and turn it back on at 0830 while I am working.
So I do not keep a close eye on anything.
And it looks like I really don't need to, which is nice.
20) Message boards : Number crunching : Myocyte beta v0.16 (Message 1815)
Posted 2 Aug 2022 by Greg_BE
Post:
35 of the first 58 done ok.
Have a bunch more to work through.
Now 102 stored.


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